University of Salzburg
Salzburg | Website
Short Description
The server infrastructure includes 15 high-performance computers with multi-core processors (up to 3 GHz)
2 x Sun Fire V40z
7 x HP ProLiant
4 x SUN Fire X 4140
1 x supermicro 4 HE Dual
1 s supermicro 1 HE 2x10-core
2 x HE Intel Dual CPU
1 x LYNX CALLEO
The PC infrastructure includes about 20 desktop computers (Linux, Windows, MacOS X)
Contact Person
Prof. Dr. Manfred Sippl
Research Services
The developed methods (protein structure analysis, protein structure comparison, efficient protein structure search, immunoinformatics, etc.) are made available to the scientific community in the form of software and web services.
Methods & Expertise for Research Infrastructure
Storage of protein structure data
Calculation of protein classifications
Development of energy functions for protein structure analysis
Identification of transcription factor binding sites
Immunoinformatics
Software development
Data analysis
In many cases, the results obtained are also provided as a web service to the scientific community.
Fachbereich Biowissenschaften
0043 662 8044 5797
manfred.sippl@sbg.ac.at
https://www.came.sbg.ac.at/
2016
Laimer J., Hiebl-Flach J., Lengauer D., Lackner P.
Bioinformatics
http://bioinformatics.oxfordjournals.org/content/early/2016/01/27/bioinformatics.btv769.abstract
Structure-Based Characterization of Multiprotein Complexes
2014
Wiederstein M., Gruber M., Frank K., Melo F., Sippl M.J.
Structure
http://dx.doi.org/10.1016/j.str.2014.05.005
D-Light on promoters: a client-server system for the analysis and visualization of cis-regulatory elements
2013
Laimer J., Zuzan C.J., Ehrenberger T., Freudenberger M., Gschwandtner S., Lebherz C., Lackner P.
BMC Bioinformatics
http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-14-140
Detection of spatial correlations in protein structures and molecular complexes
2012
Sippl M.J., Wiederstein M.
Structure
http://dx.doi.org/10.1016/j.str.2012.01.024
Real space refinement of crystal structures with canonical distributions of electrons
2011
Ginzinger S., Gruber M., Brandstetter H., Sippl M.J.
Structure
http://dx.doi.org/10.1016/j.str.2011.10.011
High-performance signal peptide prediction based on sequence alignment techniques
2008
Frank K., Sippl M.J.
Bioinformatics
http://dx.doi.org/10.1093/bioinformatics/btn422
ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins
2007
Wiederstein M., Sippl M.J.
Nucleic Acids Research
http://dx.doi.org/10.1093/nar/gkm290
NQ-Flipper: recognition and correction of erroneous asparagine and glutamine side-chain rotamers in protein structures
2007
Weichenberger C.X., Sippl M.J.
Nucleic Acids Research
http://dx.doi.org/10.1093/nar/gkm263